Dockerfile

FROM openanalytics/r-base

MAINTAINER John Erickson "erickj4@rpi.edu"

RUN apt-get remove cmake
RUN apt-get update 
RUN apt-get upgrade -y
RUN apt-get install -y cmake

# system libraries of general use
RUN apt-get update && apt-get install -y --no-install-recommends \
    sudo \
#    cmake \
    libcurl4-gnutls-dev \
    libcairo2-dev \
    libxt-dev \
    libssl-dev \
    libssh2-1-dev \
    libxml2-dev \
    libproj-dev \
    libgdal-dev \
    libudunits2-dev \
    libtiff-dev \
    libjpeg-dev \
    && rm -rf /var/lib/apt/lists/*

## Regular R packages
RUN R -e 'install.packages("ggplot2",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("shiny",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("dplyr",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("survival",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("readr",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("bslib",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("survminer",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("lubridate",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("RColorBrewer",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("shinyBS",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("ggrepel",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("DT",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("pheatmap",repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("sClust", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("gridExtra", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("ppclust", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("reshape2", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("clusterSim", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("factoextra", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("lamW", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("e1071", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("caret", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("shinyjs", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("plotly", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("tibble", repos="https://cloud.r-project.org/")'
RUN R -e 'install.packages("heatmaply", repos="https://cloud.r-project.org/")'

# copy the app to the image
RUN mkdir /root/defitoolkit
COPY DeFi_Toolkit /root/defitoolkit

COPY Rprofile.site /usr/lib/R/etc/

EXPOSE 3838

CMD ["R", "-e", "shiny::runApp('/root/defitoolkit')"]