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CSP_Rank/pdbstat_deepclean_script_5lvf.txt

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load coo pdb ./PDB_FILES/5lvf_af2_min_2.pdb
all
load coo pdb ./PDB_FILES/5lvf_af2_min_1.pdb
all
set sscutoff 1.8
set omegac 40.0
check
dele bad
find close
dele bad close
dele bad bond
write coo pdb {PDB_FILES}5lvf_clean.pdb