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November 16, 2023 13:24
April 2, 2024 13:59
November 19, 2022 19:18

PDBStat_public

PDBStat is a text-based program, no graphics sorry!.

Here are, available to download, executables for different versions of PDBStat.

The files PdbStat-x.xx.xx.tgz include executables for different systems/architectures:

  1. MacOSX: both ARM1 and x86_64 (for Intel Macs)
  2. Linux: for x86_64, statically compiled

INSTALL

  1. Download the package

  2. For our usual installations it goes to /opt/software (the pdbstat script in the distribution is ready for that kind of installation, no changes needed)

  • cd /opt/software
  • tar xvfz PdbStat-x.xx.xx.tgz (you may need root permissions for this)
  • cp the pdbstat script located in /opt/software/PdbStat5X/ to a place in your PATH
  1. If you try to install it in another place, let's say under /usr/local
  • cd /usr/local
  • tar xvfz PdbStat-x.xx.xx.tgz (you may need root permissions for this)
  • edit the pdbstat script located in /usr/local/PdbStat5X changing the line "PdbStatROOT=/opt/software/PdbStat5X" to "PdbStatROOT=/usr/local/PdbStat5X"
  • cp the pdbstat script located in /usr/local/PdbStat5X to a place in your PATH
  • that should be all you need
  1. To run it:
  • open a terminal and type pdbstat (assuming it is in your PATH it will start the program, sorry NO grahics at all it is a text based program)

Please, let me know if something is not worrking as expected

In case you find it useful and use it, please be sure to cite the publication:

- Tejero, R., Snyder, D., Mao, B., Aramini, J.M. and Montelione, G.T.; 
  "PDBStat: A universal restraint converter and restraint analysis software package 
  for protein NMR", J. Biomol. NMR, 56: 337-351, 2013

Enjoy!

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