Skip to content

RPIBioinformatics/PDBStat_public

main
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
Code

Files

Permalink
Failed to load latest commit information.

PDBStat_public

PDBStat is a text-based program, no graphics sorry!.

Here are, available to download, executables for different versions of PDBStat.

The files PdbStat-x.xx.xx.tgz include executables for different systems/architectures:

  1. MacOSX: both ARM1 and x86_64 (for Intel Macs)
  2. Linux: for x86_64, statically compiled

INSTALL

  1. Download the package

  2. For our usual installations it goes to /opt/software (the pdbstat script in the distribution is ready for that kind of installation, no changes needed)

  • cd /opt/software
  • tar xvfz PdbStat-x.xx.xx.tgz (you may need root permissions for this)
  • cp the pdbstat script located in /opt/software/PdbStat5X/ to a place in your PATH
  1. If you try to install it in another place, let's say under /usr/local
  • cd /usr/local
  • tar xvfz PdbStat-x.xx.xx.tgz (you may need root permissions for this)
  • edit the pdbstat script located in /usr/local/PdbStat5X changing the line "PdbStatROOT=/opt/software/PdbStat5X" to "PdbStatROOT=/usr/local/PdbStat5X"
  • cp the pdbstat script located in /usr/local/PdbStat5X to a place in your PATH
  • that should be all you need
  1. To run it:
  • open a terminal and type pdbstat (assuming it is in your PATH it will start the program, sorry NO grahics at all it is a text based program)

Please, let me know if something is not worrking as expected

In case you find it useful and use it, please be sure to cite the publication:

- Tejero, R., Snyder, D., Mao, B., Aramini, J.M. and Montelione, G.T.; 
  "PDBStat: A universal restraint converter and restraint analysis software package 
  for protein NMR", J. Biomol. NMR, 56: 337-351, 2013

Enjoy!

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published