PDBStat_public
PDBStat is a text-based program, no graphics sorry!.
Here are, available to download, executables for different versions of PDBStat.
The files PdbStat-x.xx.xx.tgz include executables for different systems/architectures:
- MacOSX: both ARM1 and x86_64 (for Intel Macs)
- Linux: for x86_64, statically compiled
INSTALL
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Download the package
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For our usual installations it goes to /opt/software (the pdbstat script in the distribution is ready for that kind of installation, no changes needed)
- cd /opt/software
- tar xvfz PdbStat-x.xx.xx.tgz (you may need root permissions for this)
- cp the pdbstat script located in /opt/software/PdbStat5X/ to a place in your PATH
- If you try to install it in another place, let's say under /usr/local
- cd /usr/local
- tar xvfz PdbStat-x.xx.xx.tgz (you may need root permissions for this)
- edit the pdbstat script located in /usr/local/PdbStat5X changing the line "PdbStatROOT=/opt/software/PdbStat5X" to "PdbStatROOT=/usr/local/PdbStat5X"
- cp the pdbstat script located in /usr/local/PdbStat5X to a place in your PATH
- that should be all you need
- To run it:
- open a terminal and type pdbstat (assuming it is in your PATH it will start the program, sorry NO grahics at all it is a text based program)
Please, let me know if something is not worrking as expected
In case you find it useful and use it, please be sure to cite the publication:
- Tejero, R., Snyder, D., Mao, B., Aramini, J.M. and Montelione, G.T.;
"PDBStat: A universal restraint converter and restraint analysis software package
for protein NMR", J. Biomol. NMR, 56: 337-351, 2013
Enjoy!